PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D09G1659
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 245aa    MW: 27223.3 Da    PI: 9.3898
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D09G1659genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.82.5e-1373121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrwqkyl 48 
                      +g+W++ Ed++l d++ ++G g+W++ ++    + R++k+c++rw +yl
      Gh_D09G1659  73 KGAWSKLEDQKLTDYILKHGEGCWRSLPQAAAgLLRCGKSCRLRWVNYL 121
                      79*********************************************97 PP

2Myb_DNA-binding52.31.3e-16127169145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+
      Gh_D09G1659 127 RGNFGEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNHWN 169
                      89********************.*********.***********8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.1E-2164123IPR009057Homeodomain-like
PROSITE profilePS5129411.53268121IPR017930Myb domain
SuperFamilySSF466891.49E-2671168IPR009057Homeodomain-like
SMARTSM007172.8E-1072123IPR001005SANT/Myb domain
PfamPF002491.3E-1173121IPR001005SANT/Myb domain
CDDcd001673.29E-875121No hitNo description
PROSITE profilePS5129426.751122176IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-24124176IPR009057Homeodomain-like
SMARTSM007172.0E-15126174IPR001005SANT/Myb domain
PfamPF002495.2E-15127169IPR001005SANT/Myb domain
CDDcd001673.64E-11129172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MQSVTNPTAG SRKSSHGSWG QTQTLVYIDI LLVSLFISPS LHLLWSVAFA CLNSLPLGLQ  60
MRKPCCEKKD TNKGAWSKLE DQKLTDYILK HGEGCWRSLP QAAAGLLRCG KSCRLRWVNY  120
LRPDLKRGNF GEDEEDLIIK LHALLGNRWS LIAGRLPGRT DNEVKNHWNI HLRKKLLMMG  180
IDPNNRRSLL SPTLTKSNAS NDSSSACQPF NPATASETIS STCLPDLNLD LTIAPPLSHQ  240
NLALN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-287017624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4591652e-65AJ459165.1 Gossypium hirsutum partial myb135 gene, clone pGhMYB135.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486405.11e-165PREDICTED: myb-related protein 308-like
SwissprotP813936e-75MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A0D2S6461e-165A0A0D2S646_G
STRINGPOPTR_0010s12420.12e-85(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-72myb domain protein 3